BAGET is a web service designed to facilitate extraction of specific gene and protein sequences from completely determined prokaryotic genomes. Upon selection of a particular prokaryotic organism and gene, two levels of visual gene context information are provided on a single dynamic page: (i) a graphical representation of a user defined portion of the chromosome centered on the gene of interest and (ii) the DNA sequence of the query gene, of the immediate neighboring genes and the intergenic regions each identified by a consistent color code.
Hepp B, Da Cunha V, Lorieux F, Oberto J. BAGET 2.0: an updated web tool for the effortless retrieval of prokaryotic gene context and sequence. Bioinformatics. 2021 Sep 9;37(17):2750-2752. doi: 10.1093/bioinformatics/btab082. PMID: 33532841; PMCID: PMC8428571.